| Albany, Islote | ☼ | Albany | marine | (to follow) |
| Albemarle, Punta | ☼ | Isabela | terrestrial | (to follow) |
| Alcedo, Volcán | ☼ | Isabela | terrestrial, restricted | special permission required |
| Alfaro, Punta | ☼ | Isabela | marine | (to follow) |
| Alieri, Cerro | ☼ | Floreana | terrestrial | (to follow) |
| Arco, El | ☼ | Arco, El | marine | (to follow) |
| Arenal, El | ☼ | Arenal, El | marine | (to follow) |
| Asilo de la Paz | ☼ | Floreana | terrestrial | “Pirate” caves, spring, tortoise pen |
| Bachas, Playa Las | ☼ | Santa Cruz | terrestrial | (to follow) |
| Bainbridge Rocks | ☼ | Bainbridge | marine | (to follow) |
| Bajo Gardner | ☼ | Gardner by Española | marine | (to follow) |
| Ballena, Roca | ☼ | Ballena, Roca | marine | (to follow) |
| Banana, La | ☼ | Banana, La | marine | (to follow) |
| Baquerizo, Playa | ☼ | San Cristóbal | terrestrial | (to follow) |
| Baronesa, Mirador de la | ☼ | Floreana | terrestrial | (to follow) |
| beach, unnamed | ☼ | Bartolomé | terrestrial | (to follow) |
| beach, unnamed | ☼ | Genovesa | terrestrial | (to follow) |
| beach, unnamed | ☼ | Rábida | terrestrial | (to follow) |
| beach, unnamed | ☼ | Santa Fe | terrestrial | (to follow) |
| Beagle, Islotes | ☼ | Beagle | marine | (to follow) |
| Blanca, Roca | ☼ | Blanca, Roca | marine | (to follow) |
| Brujo, Cerro | ☼ | San Cristóbal | terrestrial | (to follow) |
| Bucanero, Caleta | ☼ | Santiago | marine | (to follow) |
| Caamaño | ☼ | Caamaño | marine | (to follow) |
| Caldwell | ☼ | Caldwell | marine | (to follow) |
| Calera | ☼ | Isabela | terrestrial | trail, snorkeling |
| Campeón | ☼ | Campeón | marine | (to follow) |
| Carola, Punta | ☼ | San Cristóbal | terrestrial | (to follow) |
| Carrión, Punta | ☼ | Santa Cruz | marine | (to follow) |
| Chalmers, Cabo | ☼ | Pinta | marine | (to follow) |
| Chato Reserve, El | ☼ | Santa Cruz | terrestrial | (to follow) |
| Chico, Volcán | ☼ | Isabela | terrestrial | (to follow) |
| Chino, Playa | ☼ | San Cristóbal | terrestrial | (to follow) |
| Cifuentes Visitor Center, Miguel | ☼ | Santa Cruz | terrestrial | (to follow) |
| Cormorant, Punta | ☼ | Floreana | terrestrial | (to follow) |
| Corona del Diablo | ☼ | Corona del Diablo | marine | (to follow) |
| Cousins, Roca | ☼ | Cousins | marine | (to follow) |
| Cowley | ☼ | Cowley | marine | (to follow) |
| Crocker, Cerro | ☼ | Santa Cruz | terrestrial | (to follow) |
| Daphne Major | ☼ | Daphne Major | terrestrial, restricted | special permission required |
| Daphne Minor | ☼ | Daphne Minor | marine | (to follow) |
| Darwin Bay | ☼ | Genovesa | marine | (to follow) |
| Derrumbre, El | ☼ | Wolf | marine | (to follow) |
| Don Ferdi, Roca | ☼ | Bainbridge Rocks, #8 | marine | (to follow) |
| Douglas, Cabo | ☼ | Fernandina | marine | (to follow) |
| Dragón, Cerro | ☼ | Santa Cruz | terrestrial | (to follow) |
| Dumb, Islote | ☼ | Dumb | marine | (to follow) |
| Edén, Isla | ☼ | Edén, Isla | marine | (to follow) |
| Egas, Puerto | ☼ | Santiago | terrestrial | (to follow) |
| Elizabeth Bay | ☼ | Isabela | marine | (to follow) |
| Enderby | ☼ | Enderby | marine | (to follow) |
| Espejo, Punta | ☼ | Marchena | marine | (to follow) |
| Espinoza, Punta | ☼ | Fernandina | terrestrial | (to follow) |
| Espumilla, Playa | ☼ | Santiago | terrestrial | (to follow) |
| Este, Roca | ☼ | Este, Roca | marine | (to follow) |
| Estación, Playa de la | ☼ | Santa Cruz | terrestrial | (to follow) |
| Estrada, Punta | ☼ | Santa Cruz | marine | (to follow) |
| Five Fingers | ☼ | Five Fingers | marine | (to follow) |
| Galapaguera Cerro Colorado | ☼ | San Cristóbal | terrestrial | (to follow) |
| Galapaguera Natural | ☼ | San Cristóbal | terrestrial | (to follow) |
| Garcia, Punta | ☼ | Isabela | marine | (to follow) |
| Gardner Bay | ☼ | Española | terrestrial | (to follow) |
| Gardner by Española | ☼ | Gardner by Española | marine | (to follow) |
| Gardner by Floreana | ☼ | Gardner by Floreana | marine | (to follow) |
| Garrapatero, El | ☼ | Santa Cruz | terrestrial | (to follow) |
| Gemelos, Los | ☼ | Santa Cruz | terrestrial | (to follow) |
| Gordon, Rocas | ☼ | Gordon, Rocas | marine | (to follow) |
| Grande, Puerto | ☼ | San Cristóbal | terrestrial | (to follow) |
| Grietas, Las | ☼ | Santa Cruz | marine | (to follow) |
| Guy Fawkes Sur | ☼ | Guy Fawkes Sur | marine | (to follow) |
| Hammond, Cabo | ☼ | Fernandina | marine | (to follow) |
| Hermanos, Los | ☼ | Hermanos, Los | marine | (to follow) |
| Ibbetson, Cabo | ☼ | Pinta | marine | (to follow) |
| Interpretation Center | ☼ | San Cristóbal | terrestrial | (to follow) |
| James Bay | ☼ | Santiago | marine | (to follow) |
| Junco Lagoon, La | ☼ | San Cristóbal | terrestrial | (to follow) |
| León Dormido | ☼ | León Dormido | marine | (to follow) |
| Llerena Breeding Center, Fausto | ☼ | Santa Cruz | terrestrial | (to follow) |
| Loberia, La | ☼ | Floreana | terrestrial | (to follow) |
| Loberia, La | ☼ | San Cristóbal | terrestrial | (to follow) |
| Lobos | ☼ | Lobos | terrestrial | (to follow) |
| Manglecito | ☼ | San Cristóbal | terrestrial | (to follow) |
| Mangle, Punta | ☼ | Fernandina | marine | (to follow) |
| Marshall, Cabo | ☼ | Isabela | marine | (to follow) |
| Miedo, Punta el | ☼ | Santa Fe | marine | (to follow) |
| Mejía, Punta | ☼ | Marchena | marine | (to follow) |
| Montalvo, Punta | ☼ | Marchena | marine | (to follow) |
| Moreno, Punta | ☼ | Isabela | terrestrial | (to follow) |
| Negra, Playa | ☼ | Marchena | marine | (to follow) |
| Nerus, Rocas | ☼ | Pinta | marine | (to follow) |
| none | ☼ | Baltra | airport | no visitor sites |
| none | ☼ | Xarifa | islet off Española | no visitor sites |
| Ochoa, Playa | ☼ | San Cristóbal | terrestrial | (to follow) |
| Onan, Islote | ☼ | Onan | marine | (to follow) |
| Opuntias, Jardin de las | | San Cristóbal | terrestrial | (location unknown) |
| Osborn | ☼ | Osborn | terrestrial | (to follow) |
| Palmitas, Las | ☼ | Santa Cruz | marine | (to follow) |
| Perla, Concha de | ☼ | Isabela | terrestrial | swimming, snorkeling |
| Perros, Playa de los | ☼ | Santa Cruz | marine | (to follow) |
| Pitt, Islote Punta | ☼ | Pitt, Islote Punta | marine | (to follow) |
| Pitt, Punta | ☼ | San Cristóbal | terrestrial | (to follow) |
| Plaza Sur | ☼ | Plaza Sur | marine | (to follow) |
| Plaza Sur | ☼ | Plaza Sur | terrestrial | (to follow) |
| Posada, Puerto | ☼ | Pinta | marine | (to follow) |
| Post Office Bay | ☼ | Floreana | terrestrial | (to follow) |
| Prince Philip's Steps | ☼ | Genovesa | terrestrial | (to follow) |
| Rosa, Cabo | ☼ | Isabela | marine | (to follow) |
| Salt Mine (crater) | ☼ | Santiago | terrestrial | (to follow) |
| Seymour | ☼ | Seymour | terrestrial | (to follow) |
| Seymour, Canal | ☼ | Seymour | marine | (to follow) |
| Shark Bay, Punta | ☼ | Wolf | marine | (to follow) |
| Shimpth, Caleta [sic, Schimpff] | ☼ | Isabela | marine | (to follow) |
| Sierra Negra, Volcán | ☼ | Isabela | terrestrial | (to follow) |
| Sin Nombre | ☼ | Sin Nombre | marine | (to follow) |
| Sombrero Chino | ☼ | Sombrero Chino | terrestrial | (to follow) |
| Suárez, Punta | ☼ | Española | marine | (to follow) |
| Suárez, Punta | ☼ | Española | terrestrial | (to follow) |
| Sucre, Cueva de | ☼ | Isabela | terrestrial | (to follow) |
| Sulivan Bay | ☼ | Santiago | terrestrial | (to follow) |
| Sulphur Mine | ☼ | Isabela | terrestrial | (to follow) |
| Tagus Cove | ☼ | Isabela | marine | (to follow) |
| Tagus Cove | ☼ | Isabela | terrestrial | (to follow) |
| Tijeretas, Cerro | ☼ | San Cristóbal | marine | (to follow) |
| Tijeretas, Cerro | ☼ | San Cristóbal | terrestrial | (to follow) |
| Tintoreras, Las | ☼ | Tintoreras, Las | terrestrial | (to follow) |
| Tortuga | ☼ | Tortuga | marine | (to follow) |
| Tortuga Bay | ☼ | Santa Cruz | marine | (to follow) |
| Tortuga Negra, Caleta | ☼ | Santa Cruz | marine | (to follow) |
| Tortuga Negra, Playa | ☼ | Isabela | terrestrial, restricted | special permission required |
| Tortuga Oeste | ☼ | Tortuga Oeste | marine | (to follow) |
| Tuneles; Mirador de los Túneles | ☼ | Santa Cruz | terrestrial | (to follow) |
| Tupiza Breeding Center, Arnaldo | ☼ | Isabela | terrestrial | (to follow) |
| Unión, Roca | ☼ | Unión, Roca | marine | (to follow) |
| Urbina Bay | ☼ | Isabela | terrestrial | (to follow) |
| Ventana, La | ☼ | Ventana, La | marine | (to follow) |
| Viuda, La | ☼ | Viuda, La | marine | (to follow) |
| Whale Bay | ☼ | Santa Cruz | terrestrial | (to follow) |
| Watson | ☼ | Watson | marine | (to follow) |
| Wetlands | ☼ | Isabela | terrestrial | (to follow) |
| Zona Noreste | ☼ | Seymour | marine | (to follow) |